Package: MetaStan 1.0.0

MetaStan: Bayesian Meta-Analysis via 'Stan'

Performs Bayesian meta-analysis, meta-regression and model-based meta-analysis using 'Stan'. Includes binomial-normal hierarchical models and option to use weakly informative priors for the heterogeneity parameter and the treatment effect parameter which are described in Guenhan, Roever, and Friede (2020) <doi:10.1002/jrsm.1370>.

Authors:Burak Kuersad Guenhan [aut, cre], Christian Roever [aut], Trustees of Columbia University [cph]

MetaStan_1.0.0.tar.gz
MetaStan_1.0.0.zip(r-4.7)MetaStan_1.0.0.zip(r-4.6)MetaStan_1.0.0.zip(r-4.5)
MetaStan_1.0.0.tgz(r-4.6-x86_64)MetaStan_1.0.0.tgz(r-4.6-arm64)MetaStan_1.0.0.tgz(r-4.5-x86_64)MetaStan_1.0.0.tgz(r-4.5-arm64)
MetaStan_1.0.0.tar.gz(r-4.7-arm64)MetaStan_1.0.0.tar.gz(r-4.7-x86_64)MetaStan_1.0.0.tar.gz(r-4.6-arm64)MetaStan_1.0.0.tar.gz(r-4.6-x86_64)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
MetaStan/json (API)

# Install 'MetaStan' in R:

install.packages('MetaStan', repos = c('https://gunhanb.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/gunhanb/metastan/issues

Uses libs:

c++– GNU Standard C++ Library v3

Datasets:

dat.Berkey1995 - Trials investigating effectiveness of the BCG vaccine against TB
dat.Boucher2016 - PARESTHESIA RATES WITH TOPIRAMATE IN MIGRAINE PROPHYLAXIS TRIALS
dat.Boucher2016.pairwise - PARESTHESIA RATES WITH TOPIRAMATE IN MIGRAINE PROPHYLAXIS TRIALS
dat.Crins2014 - Pediatric liver transplant example data
dat.Eletriptan - Migraine pain relief example

On CRAN:

cpp

5.13 score 9 stars 10 scripts 277 downloads 7 exports 59 dependencies

Last updated from:2fe3438fd1. Checks:11 WARNING, 1 OK, 1 FAIL. Indexed: yes.

Target	Result	Time
linux-devel-arm64	WARNING	419
linux-devel-x86_64	WARNING	397
source / vignettes	OK	547
linux-release-arm64	WARNING	402
linux-release-x86_64	WARNING	430
macos-release-arm64	WARNING	328
macos-release-x86_64	WARNING	706
macos-oldrel-arm64	WARNING	472
macos-oldrel-x86_64	WARNING	588
windows-devel	WARNING	502
windows-release	WARNING	437
windows-oldrel	WARNING	551
wasm-release	FAIL	191

Exports:compare_MBMA convert_data_arm create_MetaStan_dat forest_plot MBMA_stan meta_stan metastan_data

Dependencies:abind backports BH callr checkmate cli coda cpp11 desc digest distributional farver forestplot generics ggplot2 glue gridExtra gtable HDInterval inline isoband labeling lattice lifecycle loo magrittr mathjaxr Matrix matrixStats metadat metafor nlme numDeriv otel pbapply pillar pkgbuild pkgconfig posterior processx ps QuickJSR R6 RColorBrewer Rcpp RcppEigen RcppParallel rlang rstan rstantools S7 scales StanHeaders tensorA tibble utf8 vctrs viridisLite withr

Conducting meta-analysis using MetaStan

Introduction | Installation | Fitting a binomial-normal hierarchical model | References

Rendered fromMetaStan_BNHM.Rmdusingknitr::rmarkdown

Last update: 2021-03-09
Started: 2018-08-28

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
The 'MetaStan' package.	MetaStan-package MetaStan
Compare MBMA fits using LOO-IC	compare_MBMA
Convert contrast-based dataset to arm-based dataset (deprecated)	convert_data_arm
Prepare model-based meta-analysis dataset for Stan.	create_MetaStan_dat
Trials investigating effectiveness of the BCG vaccine against TB	dat.Berkey1995
PARESTHESIA RATES WITH TOPIRAMATE IN MIGRAINE PROPHYLAXIS TRIALS	dat.Boucher2016
PARESTHESIA RATES WITH TOPIRAMATE IN MIGRAINE PROPHYLAXIS TRIALS	dat.Boucher2016.pairwise
Pediatric liver transplant example data	dat.Crins2014
Migraine pain relief example (Eletriptan)	dat.Eletriptan
Plot a forest plot	forest_plot
Fitting a model-based meta-analysis model using Stan	MBMA_stan
Fitting a meta-analysis model using Stan	meta_stan
Prepare meta-analysis dataset for meta_stan function	metastan_data
Plot a dose-response plot	plot.MBMA_stan
Print MBMA object	print.MBMA_stan
Print meta_stan object	print.meta_stan